PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0221s00260.1
Common NameLR48_Vigan04g162900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 327aa    MW: 36442.4 Da    PI: 4.571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0221s00260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1991141155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Vang0221s00260.1  91 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIRLRG 141
                       59********.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-3291148No hitNo description
PfamPF008479.2E-1392141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-3092149IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2192149IPR016177DNA-binding domain
PROSITE profilePS5103223.59192149IPR001471AP2/ERF domain
SMARTSM003806.2E-3892155IPR001471AP2/ERF domain
PRINTSPR003673.4E-1093104IPR001471AP2/ERF domain
PRINTSPR003673.4E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAKGRLLSTK KSQTNSNTDR RVVRISYTDP DATDSSSDDE SFPFARQRIK RYVNHIEIQT  60
ATAAAPNVLS NARKRPAADP CRRQVKLHSG KKFRGVRQRP WGKWAAEIRD PARRVRLWLG  120
TYDTAEEAAM VYDNAAIRLR GPDALTNFVT PPQKEPPPAA AAEVPELKVG VAEEASGSGY  180
DSGDDHCHHN LSSPTSVLHF RTNSNEENSE KAEEGLRECQ GETETSWFDE KGEFMSLENL  240
PEWNDVFNFE APEYPLVFEE ERVVDESQML GETMAFSPGE AFSDTSSILL ADSLIDFDKA  300
CSPSTFCQVD DYFQDILLAS DPLVLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2190148362ATERF1
3gcc_A2e-2190148362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522366.10.0PREDICTED: ethylene-responsive transcription factor CRF1
SwissprotQ9SUE39e-55CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0L9UFD60.0A0A0L9UFD6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RE240.0A0A0S3RE24_PHAAN; Uncharacterized protein
STRINGGLYMA06G13040.21e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-42cytokinin response factor 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]